Transcript: lnc-APC-1:5

Basic information

LNCipedia transcript ID: lnc-APC-1:5 
LNCipedia gene ID: lnc-APC-1
Location (hg38): chr5:112893333-112894001
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 669 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: NONHSAT103250; ENST00000602872.1
Alternative gene names: ENSG00000270067.1; CTC-487M23.5; AC008536.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.4552 non-coding 
CPAT coding probability 0.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-APC-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZRSR1-1:1
4.0 lnc-ZRSR1-1:1
4.1 lnc-ZRSR1-1:1
5.0 lnc-ZRSR1-1:1
5.1 lnc-AP3S1-41:1
5.2 lnc-APC-1:5