Transcript: lnc-SMIM10L2A-1:2

Basic information

LNCipedia transcript ID: lnc-SMIM10L2A-1:2 
LNCipedia gene ID: lnc-SMIM10L2A-1
Location (hg38): chrX:135396429-135397747
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 388 bp
Exons: 2
Sources: Refseq - Dec 2014
Alternative transcript names: NR_104652
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -174.4273 non-coding 
CPAT coding probability 10.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMIM10L2A-1:2 no no no no

Available literature

  1. Yang (2015), Genome-wide analysis of long noncoding RNA profile in human gastric epithelial cell response to Helicobacter pylori., Jpn. J. Infect. Dis.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZNF449-1:2
4.0 lnc-ZNF449-1:2
4.1 lnc-ZNF449-1:2
5.0 lnc-ZNF449-1:2
5.1 lnc-TEX13C-145:2
5.2 lnc-SMIM10L2A-1:2