Transcript: lnc-ZC3H12B-1:5

Basic information

LNCipedia transcript ID: lnc-ZC3H12B-1:5 
LNCipedia gene ID: lnc-ZC3H12B-1
Location (hg38): chrX:65588398-65600750
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 487 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000429601; ENST00000429601.1; RP11-368D24__A.1-002; OTTHUMT00000056979.1; NONHSAT137343
Alternative gene names: ENSG00000231669; RP11-368D24__A.1; ENSG00000231669.1; OTTHUMG00000021722.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -189.0347 non-coding 
CPAT coding probability 23.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZC3H12B-1:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MSN-1:2
3.1 lnc-MSN-1:2
4.0 lnc-MSN-1:2
4.1 lnc-MSN-1:2
5.0 lnc-MSN-1:2
5.1 lnc-CXorf49B-61:3
5.2 lnc-ZC3H12B-1:5