Transcript: lnc-MSN-1:5

Basic information

LNCipedia transcript ID: lnc-MSN-1:5 
LNCipedia gene ID: lnc-MSN-1
Location (hg38): chrX:65366654-65368986
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 267 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00017426; NONHSAT137334
Alternative gene names: XLOC_008001; linc-ZC3H12B-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -177.7262 non-coding 
CPAT coding probability 0.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MSN-1:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZC3H12B-1:1
3.1 lnc-ZC3H12B-1:1
4.0 lnc-ZC3H12B-1:1
4.1 lnc-ZC3H12B-1:1
5.0 lnc-ZC3H12B-1:1
5.1 lnc-CXorf49B-66:1
5.2 lnc-MSN-1:5