Transcript: LINC02250:6

Basic information

LNCipedia transcript ID: LINC02250:6 
HGNC Gene Symbol: LINC02250    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2250
Ensembl Gene ID: ENSG00000235731
Ensembl Transcript ID: ENST00000422117
Location (hg38): chr15:25484831-25578791
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2491 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00023273; ENST00000422117; ENST00000422117.1; AC124997.1-001; OTTHUMT00000126738.1; NONHSAT041146
Alternative gene names: XLOC_011405; linc-UBE3A; ENSG00000235731; AC124997.1; ENSG00000235731.1; OTTHUMG00000056663.1; LINC02250


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 20.576 non-coding 
CPAT coding probability 1.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02250:6 no no no no

Available literature

  1. Meng (2015), Towards a therapy for Angelman syndrome by targeting a long non-coding RNA., Nature
  2. Ziats (2013), Aberrant expression of long noncoding RNAs in autistic brain., J. Mol. Neurosci.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-UBE3A-1:1
3.1 lnc-UBE3A-1:1
4.0 lnc-UBE3A-1:1
4.1 lnc-UBE3A-1:1
5.0 lnc-UBE3A-1:1
5.1 LINC02250:3
5.2 LINC02250:6