Transcript: LINC01937:3

Basic information

LNCipedia transcript ID: LINC01937:3 
HGNC Gene Symbol: LINC01937    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1937
Ensembl Gene ID: ENSG00000234279
Ensembl Transcript ID: ENST00000448543
Location (hg38): chr2:238720324-238740780
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 553 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000448543; ENST00000448543.1; AC113618.1-001; OTTHUMT00000328260.1; NONHSAT077765
Alternative gene names: ENSG00000234279; AC113618.1; ENSG00000234279.1; OTTHUMG00000152851.1; LINC01937


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -88.7225 non-coding 
CPAT coding probability 1.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01937:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TWIST2-1:1
3.1 lnc-TWIST2-1:1
4.0 lnc-TWIST2-1:1
4.1 lnc-TWIST2-1:1
5.0 lnc-TWIST2-1:1
5.1 LINC01937:2
5.2 LINC01937:3