Transcript: lnc-EIPR1-1:2

Basic information

LNCipedia transcript ID: lnc-EIPR1-1:2 
LNCipedia gene ID: lnc-EIPR1-1
Ensembl Gene ID: ENSG00000236760
Ensembl Transcript ID: ENST00000425776
Location (hg38): chr2:3131581-3133105
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 718 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003155; ENST00000425776; ENST00000425776.1; AC019118.3-002; OTTHUMT00000322600.1; NONHSAT068701
Alternative gene names: XLOC_001950; linc-MYT1L-1; ENSG00000236760; AC019118.3; ENSG00000236760.1; OTTHUMG00000151429.1; AC019118.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -142.132 non-coding 
CPAT coding probability 3.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EIPR1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TSSC1-1:2
3.1 lnc-TSSC1-1:2
4.0 lnc-TSSC1-1:2
4.1 lnc-TSSC1-1:2
5.0 lnc-TSSC1-1:2
5.1 lnc-RAD51AP2-184:2
5.2 lnc-EIPR1-1:2