Transcript: lnc-TRPC4AP-6:1

Basic information

LNCipedia transcript ID: lnc-TRPC4AP-6:1 
LNCipedia gene ID: lnc-TRPC4AP-6
Location (hg38): chr20:35126044-35126530
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 487 bp
Exons: 1
Sources: Nielsen et al.,2014
Alternative transcript names: expReg_chr20_2717_-
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 17.7163 non-coding 
CPAT coding probability 2.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRPC4AP-6:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EDEM2-1:2
4.0 lnc-TRPC4AP-6:1
4.1 lnc-TRPC4AP-6:1
5.0 lnc-TRPC4AP-6:1
5.1 lnc-MMP24OS-9:1
5.2 lnc-TRPC4AP-6:1