Transcript: lnc-TRIM29-10:1

Basic information

LNCipedia transcript ID: lnc-TRIM29-10:1 
LNCipedia gene ID: lnc-TRIM29-10
Ensembl Gene ID: ENSG00000250493
Ensembl Transcript ID: ENST00000505153
RefSeq ID: NR_132790
Location (hg38): chr11:120867933-120894797
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 6314 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000505153.2; RP11-640N11.2-001; OTTHUMT00000387802.1; NONHSAT024733; NR_132790.1
Alternative gene names: ENSG00000250493.2; RP11-640N11.2; OTTHUMG00000166092.1; AP004147.1; LOC101929227


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -8.054 non-coding 
CPAT coding probability 44.97% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TRIM29-10:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TRIM29-2:1
4.0 lnc-TRIM29-2:1
4.1 lnc-TRIM29-2:1
5.0 lnc-TRIM29-2:1
5.1 lnc-SLC37A4-47:1
5.2 lnc-TRIM29-10:1