Transcript: lnc-TMEM229A-1:1

Basic information

LNCipedia transcript ID: lnc-TMEM229A-1:1 
LNCipedia gene ID: lnc-TMEM229A-1
Ensembl Gene ID: ENSG00000243574
Ensembl Transcript ID: ENST00000467017
Location (hg38): chr7:124274679-124287544
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 650 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00013249; ENST00000467017; ENST00000467017.1; RP11-264K23.1-001; OTTHUMT00000348431.1; NONHSAT123076
Alternative gene names: XLOC_006590; linc-TMEM229A-2; ENSG00000243574; RP11-264K23.1; ENSG00000243574.1; OTTHUMG00000157319.1; AC006148.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -158.8834 non-coding 
CPAT coding probability 3.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM229A-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM229A-1:1
3.1 lnc-TMEM229A-1:1
4.0 lnc-TMEM229A-1:1
4.1 lnc-TMEM229A-1:1
5.0 lnc-TMEM229A-1:1
5.1 lnc-RNF133-11:3
5.2 lnc-TMEM229A-1:1