Transcript: lnc-TLE1-14:1

Basic information

LNCipedia transcript ID: lnc-TLE1-14:1 
LNCipedia gene ID: lnc-TLE1-14
Ensembl Gene ID: ENSG00000226798
Ensembl Transcript ID: ENST00000397864
Location (hg38): chr9:80869758-80871295
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 791 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00015839; ENST00000397864; ENST00000397864.2; RP11-289F5.1-001; OTTHUMT00000052804.1; NONHSAT132588
Alternative gene names: XLOC_007750; linc-GNAQ-1; ENSG00000226798; RP11-289F5.1; ENSG00000226798.1; OTTHUMG00000020080.1; AL138749.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -102.101 non-coding 
CPAT coding probability 6.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TLE1-14:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TLE1-1:1
3.1 lnc-TLE1-1:1
4.0 lnc-TLE1-1:1
4.1 lnc-TLE1-1:1
5.0 lnc-TLE1-1:1
5.1 lnc-ALDH1A1-50:1
5.2 lnc-TLE1-14:1