Transcript: lnc-TIFA-3:1

Basic information

LNCipedia transcript ID: lnc-TIFA-3:1 
LNCipedia gene ID: lnc-TIFA-3
Ensembl Gene ID: ENSG00000248432
Ensembl Transcript ID: ENST00000508010
Location (hg38): chr4:111804418-111809694
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 300 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007814; ENST00000508010; ENST00000508010.1; RP11-269F21.2-001; OTTHUMT00000366003.1; NONHSAT097834
Alternative gene names: XLOC_004046; linc-PITX2-2; ENSG00000248432; RP11-269F21.2; ENSG00000248432.1; OTTHUMG00000161755.1; AC139718.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -118.5652 non-coding 
CPAT coding probability 2.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TIFA-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TIFA-2:1
3.1 lnc-TIFA-3:1
4.0 lnc-TIFA-3:1
4.1 lnc-TIFA-3:1
5.0 lnc-TIFA-3:1
5.1 lnc-TIFA-3:1
5.2 lnc-TIFA-3:1