Transcript: lnc-TGFBRAP1-8:1

Basic information

LNCipedia transcript ID: lnc-TGFBRAP1-8:1 
LNCipedia gene ID: lnc-TGFBRAP1-8
Ensembl Gene ID: ENSG00000231626
Ensembl Transcript ID: ENST00000424257
Location (hg38): chr2:104580821-104581890
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 437 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003351; ENST00000424257; ENST00000424257.1; AC013402.4-001; OTTHUMT00000329251.1; NONHSAT072931
Alternative gene names: XLOC_002239; linc-MFSD9-9; ENSG00000231626; AC013402.4; ENSG00000231626.1; OTTHUMG00000153056.1; AC013402.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -149.5948 non-coding 
CPAT coding probability 0.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TGFBRAP1-8:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TGFBRAP1-7:1
3.1 lnc-TGFBRAP1-8:1
4.0 lnc-TGFBRAP1-8:1
4.1 lnc-TGFBRAP1-8:1
5.0 lnc-TGFBRAP1-8:1
5.1 lnc-AFF3-70:1
5.2 lnc-TGFBRAP1-8:1