Transcript: lnc-TBCK-2:1

Basic information

LNCipedia transcript ID: lnc-TBCK-2:1 
LNCipedia gene ID: lnc-TBCK-2
Location (hg38): chr4:106358398-106367202
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 206 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000507153; ENST00000507153.1; RP11-656C2.1-001; OTTHUMT00000363662.2
Alternative gene names: ENSG00000250298; RP11-656C2.1; ENSG00000250298.1; OTTHUMG00000161071.2; GIMD1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 1.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TBCK-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TBCK-2:1
3.1 lnc-TBCK-2:1
4.0 lnc-TBCK-2:1
4.1 lnc-TBCK-2:1
5.0 lnc-TBCK-2:1
5.1 lnc-SLC9B2-44:1
5.2 lnc-TBCK-2:1