Transcript: lnc-SYNJ2-1:1

Basic information

LNCipedia transcript ID: lnc-SYNJ2-1:1 
LNCipedia gene ID: lnc-SYNJ2-1
Location (hg38): chr6:157943975-157944544
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 570 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT115728
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -125.1232 non-coding 
CPAT coding probability 0.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SYNJ2-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SYNJ2-1:1
4.0 lnc-SYNJ2-1:1
4.1 lnc-SYNJ2-1:1
5.0 lnc-SYNJ2-1:1
5.1 lnc-GTF2H5-4:1
5.2 lnc-SYNJ2-1:1