Transcript: lnc-SYF2-1:1

Basic information

LNCipedia transcript ID: lnc-SYF2-1:1 
LNCipedia gene ID: lnc-SYF2-1
Location (hg38): chr1:25253307-25267885
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 777 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00000490
Alternative gene names: XLOC_000746; linc-C1orf63


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.1649 non-coding 
CPAT coding probability 0.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SYF2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SYF2-1:1
3.1 lnc-SYF2-1:1
4.0 lnc-SYF2-1:1
4.1 lnc-SYF2-1:1
5.0 lnc-SYF2-1:1
5.1 lnc-CRYBG2-17:1
5.2 lnc-SYF2-1:1