Transcript: lnc-SUMF2-5:2

Basic information

LNCipedia transcript ID: lnc-SUMF2-5:2 
LNCipedia gene ID: lnc-SUMF2-5
Location (hg38): chr7:56659784-56675080
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 257 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00013456; NONHSAT120783
Alternative gene names: XLOC_006112; linc-ZNF716-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.0837 non-coding 
CPAT coding probability 0.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SUMF2-5:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SUMF2-4:2
3.1 lnc-SUMF2-5:2
4.0 lnc-SUMF2-5:2
4.1 lnc-SUMF2-5:2
5.0 lnc-SUMF2-5:2
5.1 lnc-CCT6A-28:3
5.2 lnc-SUMF2-5:2