Transcript: lnc-SSTR4-2:5

Basic information

LNCipedia transcript ID: lnc-SSTR4-2:5 
LNCipedia gene ID: lnc-SSTR4-2
Location (hg38): chr20:23188128-23190307
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 556 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: TCONS_00027914; ENST00000411595; ENST00000411595.1; RP4-737E23.2-001; OTTHUMT00000078311.1
Alternative gene names: XLOC_013489; linc-NXT1; ENSG00000230387; RP4-737E23.2; ENSG00000230387.1; OTTHUMG00000032057.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -63.4747 non-coding 
CPAT coding probability 4.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SSTR4-2:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SSTR4-1:5
3.1 lnc-SSTR4-2:5
4.0 lnc-SSTR4-2:5
4.1 lnc-SSTR4-2:5
5.0 lnc-SSTR4-2:5
5.1 lnc-CST8-9:14
5.2 lnc-SSTR4-2:5