Transcript: lnc-SSTR2-2:1

Basic information

LNCipedia transcript ID: lnc-SSTR2-2:1 
LNCipedia gene ID: lnc-SSTR2-2
Location (hg38): chr17:73175483-73176633
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1151 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000569655.1; RP11-143K11.1-001; OTTHUMT00000431483.1; NONHSAT055720
Alternative gene names: ENSG00000260248.1; RP11-143K11.1; OTTHUMG00000176081.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 12.2621 non-coding 
CPAT coding probability 0.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SSTR2-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SSTR2-2:1
4.0 lnc-SSTR2-2:1
4.1 lnc-SSTR2-2:1
5.0 lnc-SSTR2-2:1
5.1 lnc-TMEM94-52:1
5.2 lnc-SSTR2-2:1