Transcript: lnc-SPANXA2-1:1

Basic information

LNCipedia transcript ID: lnc-SPANXA2-1:1 
LNCipedia gene ID: lnc-SPANXA2-1
Ensembl Gene ID: ENSG00000223438
Ensembl Transcript ID: ENST00000412163
Location (hg38): chrX:141625864-141626733
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 681 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000412163; ENST00000412163.1; RP1-171K16.5-001; OTTHUMT00000058602.1
Alternative gene names: ENSG00000223438; RP1-171K16.5; ENSG00000223438.1; OTTHUMG00000022567.1; AC235097.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -387.5289 non-coding 
CPAT coding probability 83.27% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SPANXA2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SPANXA2-1:1
3.1 lnc-SPANXA2-1:1
4.0 lnc-SPANXA2-1:1
4.1 lnc-SPANXA2-1:1
5.0 lnc-SPANXA2-1:1
5.1 lnc-MAGEA11-108:1
5.2 lnc-SPANXA2-1:1