Transcript: LINC01878:15

Basic information

LNCipedia transcript ID: LINC01878:15 
LNCipedia gene ID: LINC01878
Location (hg38): chr2:212795340-212819262
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 403 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: TCONS_00003094; ENST00000453965; ENST00000453965.1; AC093381.2-001; OTTHUMT00000336996.1; NONHSAT076697
Alternative gene names: XLOC_001833; linc-SPAG16-3; ENSG00000234308; AC093381.2; ENSG00000234308.1; OTTHUMG00000154769.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -48.2977 non-coding 
CPAT coding probability 1.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01878:15 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SPAG16-3:6
3.1 lnc-SPAG16-4:6
4.0 lnc-SPAG16-4:6
4.1 lnc-SPAG16-4:6
5.0 lnc-SPAG16-4:6
5.1 LINC01878:8
5.2 LINC01878:15