Transcript: lnc-SMCR8-1:1

Basic information

LNCipedia transcript ID: lnc-SMCR8-1:1 
LNCipedia gene ID: lnc-SMCR8-1
Location (hg38): chr17:18324222-18325897
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1676 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT146175; ENST00000577764.1
Alternative gene names: ENSG00000267350.2; RP1-178F10.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -170.6488 non-coding 
CPAT coding probability 6.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMCR8-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SMCR8-1:1
4.0 lnc-SMCR8-1:1
4.1 lnc-SMCR8-1:1
5.0 lnc-SMCR8-1:1
5.1 lnc-GLP2R-122:1
5.2 lnc-SMCR8-1:1