Transcript: lnc-SMC4-1:1

Basic information

LNCipedia transcript ID: lnc-SMC4-1:1 
LNCipedia gene ID: lnc-SMC4-1
Location (hg38): chr3:160226483-160228054
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 424 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000490320.1; RP11-431I8.1-001; OTTHUMT00000352646.1; NONHSAT092975
Alternative gene names: ENSG00000244078.1; RP11-431I8.1; OTTHUMG00000158950.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -200.694 non-coding 
CPAT coding probability 1.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SMC4-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SMC4-1:1
4.0 lnc-SMC4-1:1
4.1 lnc-SMC4-1:1
5.0 lnc-SMC4-1:1
5.1 lnc-IQCJ-SCHIP1-16:1
5.2 lnc-SMC4-1:1