Transcript: lnc-SLITRK6-14:1

Basic information

LNCipedia transcript ID: lnc-SLITRK6-14:1 
LNCipedia gene ID: lnc-SLITRK6-14
Ensembl Gene ID: ENSG00000272515
Ensembl Transcript ID: ENST00000607405
Location (hg38): chr13:87607907-87609234
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1328 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000607405.1
Alternative gene names: ENSG00000272515.1; RP11-29P20.1; AL355578.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -69.155 non-coding 
CPAT coding probability 0.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLITRK6-14:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLITRK6-14:1
4.0 lnc-SLITRK6-14:1
4.1 lnc-SLITRK6-14:1
5.0 lnc-SLITRK6-14:1
5.1 lnc-IRS2-115:2
5.2 lnc-SLITRK6-14:1