Transcript: lnc-SLC6A7-1:1

Basic information

LNCipedia transcript ID: lnc-SLC6A7-1:1 
LNCipedia gene ID: lnc-SLC6A7-1
Location (hg38): chr5:150183738-150184353
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 481 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000546429.1; AC005895.4-001; OTTHUMT00000405795.3; NONHSAT104544
Alternative gene names: ENSG00000257938.1; AC005895.4; OTTHUMG00000165094.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -67.3562 non-coding 
CPAT coding probability 5.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC6A7-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC6A7-1:1
4.0 lnc-SLC6A7-1:1
4.1 lnc-SLC6A7-1:1
5.0 lnc-SLC6A7-1:1
5.1 lnc-HMGXB3-1:1
5.2 lnc-SLC6A7-1:1