Transcript: LINC01825:3

Basic information

LNCipedia transcript ID: LINC01825:3 
HGNC Gene Symbol: LINC01825    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1825
Ensembl Gene ID: ENSG00000223466
Ensembl Transcript ID: ENST00000452381
Location (hg38): chr2:195533035-195538681
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 850 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003073; ENST00000452381; ENST00000452381.1; AC064834.2-001; OTTHUMT00000334996.1; NONHSAT076176
Alternative gene names: XLOC_001797; linc-SLC39A10-1; ENSG00000223466; AC064834.2; ENSG00000223466.1; OTTHUMG00000154381.1; LINC01825


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -227.0084 non-coding 
CPAT coding probability 13.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01825:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC39A10-1:1
3.1 lnc-SLC39A10-1:1
4.0 lnc-SLC39A10-1:1
4.1 lnc-SLC39A10-1:1
5.0 lnc-SLC39A10-1:1
5.1 LINC01825:2
5.2 LINC01825:3