Transcript: lnc-SLC38A9-5:3

Basic information

LNCipedia transcript ID: lnc-SLC38A9-5:3 
LNCipedia gene ID: lnc-SLC38A9-5
Location (hg38): chr5:55441906-55534964
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 677 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT101496
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score -4.2716 non-coding 
CPAT coding probability 12.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SLC38A9-5:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC38A9-5:3
4.0 lnc-SLC38A9-5:3
4.1 lnc-SLC38A9-5:3
5.0 lnc-SLC38A9-5:3
5.1 lnc-ACTBL2-31:1
5.2 lnc-SLC38A9-5:3