Transcript: lnc-SLC30A7-2:5

Basic information

LNCipedia transcript ID: lnc-SLC30A7-2:5 
LNCipedia gene ID: lnc-SLC30A7-2
Location (hg38): chr1:101072660-101087265
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1295 bp
Exons: 7
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000449473; ENST00000449473.1; RP11-421L21.3-001; OTTHUMT00000029896.1; NONHSAT004834
Alternative gene names: ENSG00000233184; RP11-421L21.3; ENSG00000233184.1; OTTHUMG00000010831.1; ENSG00000233184.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.9569 non-coding 
CPAT coding probability 0.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC30A7-2:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC30A7-1:6
3.1 lnc-SLC30A7-2:5
4.0 lnc-SLC30A7-2:5
4.1 lnc-SLC30A7-2:5
5.0 lnc-SLC30A7-2:5
5.1 lnc-SLC30A7-2:5
5.2 lnc-SLC30A7-2:5