Transcript: lnc-SLC30A7-2:2

Basic information

LNCipedia transcript ID: lnc-SLC30A7-2:2 
LNCipedia gene ID: lnc-SLC30A7-2
Ensembl Gene ID: ENSG00000233184
Ensembl Transcript ID: ENST00000453011
Location (hg38): chr1:101025878-101080562
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 794 bp
Exons: 5
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000453011; ENST00000453011.1; RP11-421L21.3-005; OTTHUMT00000029900.1; NONHSAT004820; ENST00000453011.5
Alternative gene names: ENSG00000233184; RP11-421L21.3; ENSG00000233184.1; OTTHUMG00000010831.1; ENSG00000233184.2; ENSG00000233184.6; AC093157.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.9569 non-coding 
CPAT coding probability 0.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC30A7-2:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC30A7-1:2
3.1 lnc-SLC30A7-2:2
4.0 lnc-SLC30A7-2:2
4.1 lnc-SLC30A7-2:2
5.0 lnc-SLC30A7-2:2
5.1 lnc-SLC30A7-2:2
5.2 lnc-SLC30A7-2:2