Transcript: lnc-SLC16A9-1:10

Basic information

LNCipedia transcript ID: lnc-SLC16A9-1:10 
LNCipedia gene ID: lnc-SLC16A9-1
Location (hg38): chr10:59736995-59753455
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 432 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000227877.2|ENST00000414264.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 240.9667 coding 
CPAT coding probability 0.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SLC16A9-1:10 no no no no

Available literature

  1. Anderson (2015), A micropeptide encoded by a putative long noncoding RNA regulates muscle performance., Cell
  2. Hou (2014), Long noncoding RNAs expression patterns associated with chemo response to cisplatin based chemotherapy in lung squamous cell carcinoma patients., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SLC16A9-1:10
5.0 lnc-SLC16A9-1:10
5.1 lnc-MBL2-28:1
5.2 lnc-SLC16A9-1:10