Transcript: lnc-SHISA6-1:1

Basic information

LNCipedia transcript ID: lnc-SHISA6-1:1 
LNCipedia gene ID: lnc-SHISA6-1
Location (hg38): chr17:11561156-11564063
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2908 bp
Exons: 1
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000528745; ENST00000528745.1; RP11-678P16.1-001; OTTHUMT00000391581.1; NONHSAT145674
Alternative gene names: ENSG00000254652; RP11-678P16.1; ENSG00000254652.1; OTTHUMG00000166847.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -35.3071 non-coding 
CPAT coding probability 7.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SHISA6-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SHISA6-1:1
3.1 lnc-SHISA6-1:1
4.0 lnc-SHISA6-1:1
4.1 lnc-SHISA6-1:1
5.0 lnc-SHISA6-1:1
5.1 lnc-GLP2R-12:1
5.2 lnc-SHISA6-1:1