Transcript: lnc-SH3RF2-2:1

Basic information

LNCipedia transcript ID: lnc-SH3RF2-2:1 
LNCipedia gene ID: lnc-SH3RF2-2
Ensembl Gene ID: ENSG00000248125
Ensembl Transcript ID: ENST00000512571
Location (hg38): chr5:145429868-145441175
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 654 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009533; ENST00000512571; ENST00000512571.1; CTB-73N10.1-001; OTTHUMT00000372971.1; NONHSAT104375
Alternative gene names: XLOC_004593; linc-SH3RF2; ENSG00000248125; CTB-73N10.1; ENSG00000248125.1; OTTHUMG00000163385.2; AC008700.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -192.8197 non-coding 
CPAT coding probability 2.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SH3RF2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SH3RF2-1:1
3.1 lnc-SH3RF2-2:1
4.0 lnc-SH3RF2-2:1
4.1 lnc-SH3RF2-2:1
5.0 lnc-SH3RF2-2:1
5.1 lnc-AFAP1L1-51:1
5.2 lnc-SH3RF2-2:1