Transcript: lnc-SBF2-2:2

Basic information

LNCipedia transcript ID: lnc-SBF2-2:2 
LNCipedia gene ID: lnc-SBF2-2
Ensembl Gene ID: ENSG00000245522
Ensembl Transcript ID: ENST00000500698
RefSeq ID: NR_033972
Location (hg38): chr11:9754770-9759533
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2311 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000500698; TCONS_00019082; ENST00000500698.1; RP11-540A21.2-001; OTTHUMT00000386800.1; NONHSAT017936; NR_033972; NR_033972.1
Alternative gene names: ENSG00000245522; XLOC_009371; linc-TMEM41B; RP11-540A21.2; ENSG00000245522.2; OTTHUMG00000165874.1; AC026250.1; LOC440028


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -45.8841 non-coding 
CPAT coding probability 12.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SBF2-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SBF2-1:2
3.1 lnc-SBF2-2:2
4.0 lnc-SBF2-2:2
4.1 lnc-SBF2-2:2
5.0 lnc-SBF2-2:2
5.1 lnc-C11orf16-30:2
5.2 lnc-SBF2-2:2