Transcript: lnc-SATB2-1:1

Basic information

LNCipedia transcript ID: lnc-SATB2-1:1 
LNCipedia gene ID: lnc-SATB2-1
Ensembl Gene ID: ENSG00000231557
Ensembl Transcript ID: ENST00000456031
Location (hg38): chr2:198882573-199071791
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 556 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003480; ENST00000456031; ENST00000456031.1; AC018717.1-001; OTTHUMT00000335374.2; NONHSAT076245
Alternative gene names: XLOC_002451; linc-BOLL-1; ENSG00000231557; AC018717.1; ENSG00000231557.1; OTTHUMG00000154472.2; AC020718.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -168.1118 non-coding 
CPAT coding probability 0.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SATB2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SATB2-1:1
3.1 lnc-SATB2-1:1
4.0 lnc-SATB2-1:1
4.1 lnc-SATB2-1:1
5.0 lnc-SATB2-1:1
5.1 lnc-HSPD1-29:1
5.2 lnc-SATB2-1:1