Transcript: LINC02041:9

Basic information

LNCipedia transcript ID: LINC02041:9 
HGNC Gene Symbol: LINC02041    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2041
Ensembl Gene ID: ENSG00000228952
Ensembl Transcript ID: ENST00000440726
Location (hg38): chr3:187448845-187449450
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 246 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005686; ENST00000440726; ENST00000440726.1; RP11-567G11.1-001; OTTHUMT00000344261.1; NONHSAT093889
Alternative gene names: XLOC_002962; linc-LPP-5; ENSG00000228952; RP11-567G11.1; ENSG00000228952.1; OTTHUMG00000156460.1; LINC02041


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -216.165 non-coding 
CPAT coding probability 2.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02041:9 no no no no

Available literature

  1. Wang (2015), Expression profile of long non-coding RNAs in pancreatic cancer and their clinical significance as biomarkers., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RTP4-2:1
3.1 lnc-RTP4-2:1
4.0 lnc-RTP4-2:1
4.1 lnc-RTP4-2:1
5.0 lnc-RTP4-2:1
5.1 LINC02041:5
5.2 LINC02041:9