Transcript: lnc-C8orf33-6:1

Basic information

LNCipedia transcript ID: lnc-C8orf33-6:1 
LNCipedia gene ID: lnc-C8orf33-6
Ensembl Gene ID: ENSG00000255164
Ensembl Transcript ID: ENST00000530223
Location (hg38): chr8:144992914-144994837
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 439 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000530223.1; RP5-1047A19.4-001; OTTHUMT00000382670.1; NONHSAT129863
Alternative gene names: ENSG00000255164.1; RP5-1047A19.4; OTTHUMG00000165202.1; AF235103.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -77.0408 non-coding 
CPAT coding probability 2.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C8orf33-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP5-1047A19.4.1-1:1
4.0 lnc-RP5-1047A19.4.1-1:1
4.1 lnc-RP5-1047A19.4.1-1:1
5.0 lnc-RP5-1047A19.4.1-1:1
5.1 lnc-C8orf33-2:1
5.2 lnc-C8orf33-6:1