Transcript: lnc-HPGDS-8:1

Basic information

LNCipedia transcript ID: lnc-HPGDS-8:1 
LNCipedia gene ID: lnc-HPGDS-8
Ensembl Gene ID: ENSG00000248627
Ensembl Transcript ID: ENST00000502570
Location (hg38): chr4:92833685-92838842
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 349 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000502570.1; RP11-428L21.1-001; OTTHUMT00000362938.1; NONHSAT097435
Alternative gene names: ENSG00000248627.1; RP11-428L21.1; OTTHUMG00000160918.1; AC095059.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -383.3634 non-coding 
CPAT coding probability 0.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HPGDS-8:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-9B6.1.1-2:1
4.0 lnc-RP11-9B6.1.1-2:1
4.1 lnc-RP11-9B6.1.1-2:1
5.0 lnc-RP11-9B6.1.1-2:1
5.1 lnc-GPRIN3-14:1
5.2 lnc-HPGDS-8:1