Transcript: LNCPRESS2:7

Basic information

LNCipedia transcript ID: LNCPRESS2:7 
HGNC Gene Symbol: LNCPRESS2    
HGNC Full Gene Name: lncRNA p53 regulated and ESC associated 2
Ensembl Gene ID: ENSG00000249152
Ensembl Transcript ID: ENST00000502518
Location (hg38): chr4:92268767-92277075
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 616 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007796; ENST00000502518; ENST00000502518.1; RP11-562F9.2-001; OTTHUMT00000362937.1; NONHSAT097431
Alternative gene names: XLOC_004018; linc-TMSL3; ENSG00000249152; RP11-562F9.2; ENSG00000249152.1; OTTHUMG00000160917.1; LNCPRESS2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -125.5424 non-coding 
CPAT coding probability 0.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LNCPRESS2:7 no no no no

Available literature

  1. Jain (2016), LncPRESS1 Is a p53-Regulated LncRNA that Safeguards Pluripotency by Disrupting SIRT6-Mediated De-acetylation of Histone H3K56., Mol. Cell


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-9B6.1.1-1:2
3.1 lnc-RP11-9B6.1.1-1:2
4.0 lnc-RP11-9B6.1.1-1:2
4.1 lnc-RP11-9B6.1.1-1:2
5.0 lnc-RP11-9B6.1.1-1:2
5.1 LNCPRESS2:4
5.2 LNCPRESS2:7