Transcript: lnc-TMEM218-3:1

Basic information

LNCipedia transcript ID: lnc-TMEM218-3:1 
LNCipedia gene ID: lnc-TMEM218-3
Ensembl Gene ID: ENSG00000254932
Ensembl Transcript ID: ENST00000526796
Location (hg38): chr11:125258626-125266798
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 645 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000526796.2; RP11-687M24.8-001; OTTHUMT00000417820.1; NONHSAT024946
Alternative gene names: ENSG00000254932.2; RP11-687M24.8; OTTHUMG00000172319.1; AP001007.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -189.0173 non-coding 
CPAT coding probability 20.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM218-3:1 no no no no

Available literature

  1. Wang (2015), Genome-wide differential expression of synaptic long noncoding RNAs in autism spectrum disorder., Transl Psychiatry


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-687M24.8.1-1:1
4.0 lnc-RP11-687M24.8.1-1:1
4.1 lnc-RP11-687M24.8.1-1:1
5.0 lnc-RP11-687M24.8.1-1:1
5.1 lnc-ADAMTS8-58:1
5.2 lnc-TMEM218-3:1