Transcript: lnc-PABPC4L-10:1

Basic information

LNCipedia transcript ID: lnc-PABPC4L-10:1 
LNCipedia gene ID: lnc-PABPC4L-10
Ensembl Gene ID: ENSG00000249847
Ensembl Transcript ID: ENST00000514293
Location (hg38): chr4:134932889-134934131
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 646 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007837; ENST00000514293; ENST00000514293.1; RP11-192C21.2-001; OTTHUMT00000364202.1; NONHSAT098363
Alternative gene names: XLOC_004084; linc-PABPC4L-4; ENSG00000249847; RP11-192C21.2; ENSG00000249847.1; OTTHUMG00000161221.1; AC104619.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -98.5128 non-coding 
CPAT coding probability 0.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PABPC4L-10:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-62N21.1.1-10:1
3.1 lnc-RP11-62N21.1.1-10:1
4.0 lnc-RP11-62N21.1.1-10:1
4.1 lnc-RP11-62N21.1.1-10:1
5.0 lnc-RP11-62N21.1.1-10:1
5.1 lnc-CLGN-50:1
5.2 lnc-PABPC4L-10:1