Transcript: lnc-ASCL1-6:11

Basic information

LNCipedia transcript ID: lnc-ASCL1-6:11 
LNCipedia gene ID: lnc-ASCL1-6
Location (hg38): chr12:103154998-103163616
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 797 bp
Exons: 5
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00021198; NONHSAT030357
Alternative gene names: XLOC_009858; linc-STAB2-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -229.4919 non-coding 
CPAT coding probability 6.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ASCL1-6:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-552I14.1.1-1:6
3.1 lnc-RP11-552I14.1.1-1:6
4.0 lnc-RP11-552I14.1.1-1:6
4.1 lnc-RP11-552I14.1.1-1:6
5.0 lnc-RP11-552I14.1.1-1:6
5.1 lnc-STAB2-6:11
5.2 lnc-ASCL1-6:11