Transcript: lnc-C8orf76-3:1

Basic information

LNCipedia transcript ID: lnc-C8orf76-3:1 
LNCipedia gene ID: lnc-C8orf76-3
Ensembl Gene ID: ENSG00000253258
Ensembl Transcript ID: ENST00000522383
Location (hg38): chr8:123181638-123182788
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 777 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000522383.1; RP11-539E17.5-001; OTTHUMT00000381743.1; NONHSAT128521
Alternative gene names: ENSG00000253258.1; RP11-539E17.5; OTTHUMG00000165084.1; AC068228.2; AC068228.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -125.99 non-coding 
CPAT coding probability 48.60% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-C8orf76-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-539E17.5.1-1:1
4.0 lnc-RP11-539E17.5.1-1:1
4.1 lnc-RP11-539E17.5.1-1:1
5.0 lnc-RP11-539E17.5.1-1:1
5.1 lnc-WASHC5-40:1
5.2 lnc-C8orf76-3:1