Transcript: lnc-NID2-6:1

Basic information

LNCipedia transcript ID: lnc-NID2-6:1 
LNCipedia gene ID: lnc-NID2-6
Ensembl Gene ID: ENSG00000258928
Ensembl Transcript ID: ENST00000556834
RefSeq ID: NR_126331
Location (hg38): chr14:51916145-51918571
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 529 bp
Exons: 3
Sources: Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_126331; ENST00000556834.1; NR_126331.1
Alternative gene names: ENSG00000258928.1; RP11-463J10.2; AL358333.2; LOC102723604


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -74.7783 non-coding 
CPAT coding probability 1.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NID2-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-463J10.2.1-6:1
4.0 lnc-RP11-463J10.2.1-6:1
4.1 lnc-RP11-463J10.2.1-6:1
5.0 lnc-RP11-463J10.2.1-6:1
5.1 lnc-RTN1-94:1
5.2 lnc-NID2-6:1