Transcript: lnc-ESM1-4:3

Basic information

LNCipedia transcript ID: lnc-ESM1-4:3 
LNCipedia gene ID: lnc-ESM1-4
RefSeq ID: NR_104659
Location (hg38): chr5:54660158-54703324
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 579 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_104659; NR_104659.1
Alternative gene names: LOC102467080


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -93.1865 non-coding 
CPAT coding probability 8.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ESM1-4:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-45H22.3.1-1:3
4.0 lnc-RP11-45H22.3.1-1:3
4.1 lnc-RP11-45H22.3.1-1:3
5.0 lnc-RP11-45H22.3.1-1:3
5.1 lnc-ACTBL2-40:3
5.2 lnc-ESM1-4:3