Transcript: lnc-PSMD7-9:2

Basic information

LNCipedia transcript ID: lnc-PSMD7-9:2 
LNCipedia gene ID: lnc-PSMD7-9
Location (hg38): chr16:73812621-73816054
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 392 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000565061.1; RP11-53L24.1-001; OTTHUMT00000435205.1; NONHSAT143650
Alternative gene names: ENSG00000259817.1; RP11-53L24.1; OTTHUMG00000177076.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -214.4159 non-coding 
CPAT coding probability 10.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PSMD7-9:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-44L9.1.1-9:2
4.0 lnc-RP11-44L9.1.1-9:2
4.1 lnc-RP11-44L9.1.1-9:2
5.0 lnc-RP11-44L9.1.1-9:2
5.1 lnc-MARVELD3-46:2
5.2 lnc-PSMD7-9:2