Transcript: lnc-PITX2-1:4

Basic information

LNCipedia transcript ID: lnc-PITX2-1:4 
LNCipedia gene ID: lnc-PITX2-1
Ensembl Gene ID: ENSG00000250511
Ensembl Transcript ID: ENST00000503998
Location (hg38): chr4:110512488-110519505
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1447 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000503998.1; RP11-380D23.1-001; OTTHUMT00000363853.2; NONHSAT097817
Alternative gene names: ENSG00000250511.1; RP11-380D23.1; OTTHUMG00000161116.2; AC098798.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 55.7285 non-coding 
CPAT coding probability 14.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PITX2-1:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-380D23.1.1-1:1
4.0 lnc-RP11-380D23.1.1-1:1
4.1 lnc-RP11-380D23.1.1-1:1
5.0 lnc-RP11-380D23.1.1-1:1
5.1 lnc-TIFA-8:1
5.2 lnc-PITX2-1:4