Transcript: lnc-FAT3-5:9

Basic information

LNCipedia transcript ID: lnc-FAT3-5:9 
LNCipedia gene ID: lnc-FAT3-5
Ensembl Gene ID: ENSG00000255332
Ensembl Transcript ID: ENST00000577699
Location (hg38): chr11:91794362-91800931
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1033 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT023607; ENST00000577699.2; ENST00000577699.6
Alternative gene names: ENSG00000255332.3; RP11-201M22.1; ENSG00000255332.7; AP003028.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 58.764 non-coding 
CPAT coding probability 0.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-FAT3-5:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-201M22.1.1-1:12
4.0 lnc-RP11-201M22.1.1-1:12
4.1 lnc-RP11-201M22.1.1-1:12
5.0 lnc-RP11-201M22.1.1-1:12
5.1 lnc-TRIM49C-9:9
5.2 lnc-FAT3-5:9