Transcript: lnc-FAT3-5:11

Basic information

LNCipedia transcript ID: lnc-FAT3-5:11 
LNCipedia gene ID: lnc-FAT3-5
Location (hg38): chr11:91795311-91803322
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 239 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00019438; NONHSAT023609
Alternative gene names: XLOC_009248; linc-FAT3-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -69.9966 non-coding 
CPAT coding probability 0.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAT3-5:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-201M22.1.1-1:8
3.1 lnc-RP11-201M22.1.1-1:10
4.0 lnc-RP11-201M22.1.1-1:10
4.1 lnc-RP11-201M22.1.1-1:10
5.0 lnc-RP11-201M22.1.1-1:10
5.1 lnc-TRIM49C-9:11
5.2 lnc-FAT3-5:11