Transcript: lnc-FAM167A-2:2

Basic information

LNCipedia transcript ID: lnc-FAM167A-2:2 
LNCipedia gene ID: lnc-FAM167A-2
Ensembl Gene ID: ENSG00000269954
Ensembl Transcript ID: ENST00000533322
Location (hg38): chr8:11558466-11560020
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 594 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000533322.1; RP11-148O21.2-001; OTTHUMT00000383907.1; NONHSAT125067
Alternative gene names: ENSG00000255354.1; RP11-148O21.2; OTTHUMG00000165416.1; AC022239.2; ENSG00000269954.2; AC022239.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -56.7822 non-coding 
CPAT coding probability 17.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM167A-2:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-148O21.2.1-1:1
4.0 lnc-RP11-148O21.2.1-1:1
4.1 lnc-RP11-148O21.2.1-1:1
5.0 lnc-RP11-148O21.2.1-1:1
5.1 lnc-PINX1-25:2
5.2 lnc-FAM167A-2:2