Transcript: lnc-SPIDR-1:5

Basic information

LNCipedia transcript ID: lnc-SPIDR-1:5 
LNCipedia gene ID: lnc-SPIDR-1
Location (hg38): chr8:47189307-47192816
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3510 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT126435; NR_037168
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 39.4777 non-coding 
CPAT coding probability 8.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPIDR-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-1134I14.8.1-1:3
4.0 lnc-RP11-1134I14.8.1-1:3
4.1 lnc-RP11-1134I14.8.1-1:3
5.0 lnc-RP11-1134I14.8.1-1:3
5.1 lnc-KCNU1-128:5
5.2 lnc-SPIDR-1:5